Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11060817 chr12:130787732 C/T 3.93E-7 178 3.17 20.13 27.3 KM Plot
PCPG rs11061226 chr12:131385816 G/A 1.85E-7 172 24.62 25.4 19.87 KM Plot
PCPG rs11063454 chr12:5111535 A/G 3.08E-5 178 25.4 24.23 14.4 KM Plot
PCPG rs11063463 chr12:5121357 G/A 3.06E-5 176 25.53 24.1 14.4 KM Plot
PCPG rs11066852 chr12:114395549 G/A 9.14E-6 175 25.7 24.47 25.17 KM Plot
PCPG rs11070206 chr15:39753991 T/G 0.000433 177 24.85 27.27 26.33 KM Plot
PCPG rs11076605 chr16:89579123 G/A 0.000207 176 26.78 25.28 19.53 KM Plot
PCPG rs11076606 chr16:89585627 A/G 0.000238 177 26.78 25.53 19.3 KM Plot
PCPG rs11076619 chr16:89831243 C/A 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs11076620 chr16:89831520 A/T 0.000167 177 25.87 20.17 36.37 KM Plot
PCPG rs11076621 chr16:89837927 A/G 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11076622 chr16:89837951 T/C 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11076623 chr16:89844120 G/T 0.000168 177 25.87 20.2 36.37 KM Plot
PCPG rs11076624 chr16:89855749 T/C 0.000159 177 25.87 20.37 36.37 KM Plot
PCPG rs11076653 chr16:90074001 C/T 8.43E-9 176 25.87 20.37 6.62 KM Plot